Our afternoon / one-day sea kayak tours offer an opportunity for kayaking with orca whales. The San Juan Islands whale-watching season runs from April through October. From 2005 through 2018 we encountered orca whales on 35% of our afternoon kayak trips in the peak months of June through September. In spring and fall our killer whale sightings were about half as frequent compared to summer. Surprisingly, salmon orcas have been listed as endangered throughout this span and in the years from 1989 to 2004 our results were even more exceptional! No one else has come close to matching Sea Quest’s whale-watching results since we began offering kayak tours in 1989. But we can no longer take for granted that killer whale encounters will be a common feature of our tours and our past successes cannot be relied upon to predict the future.
Our kayak tours take place in the best killer whale watching waters in the US. Even so, our friendliest pods of orcas are now struggling to survive due to a shortage of salmon and both were listed as endangered in 2005. In 2013, 2019 and 2020 very few salmon migrated through the San Juan Islands and salmon orca were very scarce. Meanwhile, a larger species known as Bigg’s killer whale has been thriving in Washington and escaped being listed as endangered like their smaller cousins. The Bigg’s killer whale success is due to their preference for hunting abundant marine mammals such as seals and sea lions. Their population has been growing rapidly and now numbers over 400 whales in our region. But their stealthy habits of traveling in very small pods and keeping very quiet makes them difficult to encounter on our kayak tours. Nevertheless, our experience as local biologists and ideal whale watching location still afford you the best chance of seeing orcas whales on a sea kayak. Please read our Whale Watching Info page for important details.

Since orca whales aren’t present on every kayak tour, we also focus on a diverse variety of wildlife that can be enjoyed. Possibilities include humpback whales, minke whales, dolphins, porpoises, seals, sea lions, and otters. Active bald eagle nests rank high among the bird highlights on our San Juan Island kayak day tour. Other fascinating birds include great blue herons, black oystercatchers, rhinoceros auklets, and pigeon guillemots. Beautiful conifer forests on land are mirrored with kelp forests in the sea which are separated by colorful intertidal zones and tidepools. Every paddle stroke is a new adventure.
We have three different 1-day sea kayaking trip routes from San Juan Island. You may paddle either the east, south, or west side of the island. Our decision on route choice is often made in the final hour before your kayak tour begins and will depend on both the latest wildlife and killer whale reports as well as weather conditions and water current dynamics. Safety will always take priority, and regardless of killer whale activity, we will only use a route if wind and wave conditions are suitable. All routes are very scenic and visit parks and wildlife refuges home to a variety of marine life.
Please note: Regardless of which kayak trip route we use, killer whales may not appear during your kayak tour. Orca whales can make sudden course changes or choose to hunt in a different location. They can virtually disappear and confound the best efforts of even the most experienced biologists and whale-watching professionals. You can be assured that Sea Quest will always give you the best chance to kayak with killer whales on your kayak trip! While we try our hardest every day, we kindly ask you to temper your expectations as kayaking with orca or any other species is not guaranteed.
6 hours
All Group Sizes
All Ages
Beginner Friendly
$129
Daily at 11am
San Juan Islands, WA
(437 Reviews)
Schedule: Tours depart daily at 11am from April 1 – November 1. Call our office ahead of time to arrange out of season dates.
Trip Fee: $129 per person plus 8.3% state tax & $10 government launch fee. On rare dates, the fee is $149+ due to limited resources, and this will be noted in the online reservation system.













Book a kayak trip with Confidence: As a small family owned and operated company, all we ask is that give us the opportunity to show you the amazing wonders of kayaking in the San Juan Islands.
The best time for whale watching in the San Juan Islands is the summer season. Between June and August the number of whale sightings ,in particular, Orca whales has historically been the strongest. However, if you are not able to travel to the San Juan Islands during this historic whale watching season do not fear! There are plenty of opportunities to see a Humpback whales, sea lions and the Biggs killer whale during the shoulder season and even winter months. There are opportunities for whale watching in the San Juan Islands in all seasons, but your best chance for seeing the Southern Resident killer whales is between June and August.
There are numerous things to witness on our day sea kayak tours. Mainly we see marine birds, bald eagles and harbor seals. You also may have the opportunity to witness different whales species up close such as Orca whales or Humpback whales.
In addition to Marine life you will enjoy being out in nature where you can watch the dynamic tidal generated currents as well as the forested hillsides and serene mountain ranges renowned throughout the San Juan Island archipelago.
Here are some things to know before going for a day of sea kayaking in the San Juan Islands:
WE PROVIDE THE FOLLOWING:
Sea kayaks, all related sea kayaking trip gear, safety equipment, transportation to and from Friday Harbor and the launch beach, instruction and expert kayak guides.
WHAT YOU NEED TO BRING:
Beach clothing, beach foot wear, sun hat, sunglasses, sunscreen, and lunch. Bring a warm hat, warm sweater and rain jacket if cool, cloudy, windy or rainy. For more info read our page on how to prepare for kayak trip in the San Juan Islands.
Click here to open a full-size chart in PDF format that you can save, zoom, or print!
The shaded areas represent the best places to see killer whales. Orange indicates the best locations for finding the marine mammal-eating Bigg’s killer whales (formerly called “transients”). Green indicates the main salmon orca (also known as “resident orca”) feeding and traveling route where about 90% of their sightings have historically occurred. Orcas can randomly be found in other areas of the San Juan Islands but these are best zones for kayak whale watching success.
There are many routes to choose from but there is no “Set Route” because we believe in being flexible to the needs and safety of our customers given a multitude of factors.
The east side route features a huge seal population making it the best route for enjoying them and finding their only predator, Bigg’s killer whales. It also offers the best chance of seeing otters and the greatest variety of sea birds. Porpoises and baleen whales both occur here as well as Stellar sea lions. The one day kayak tour uses this route by default when no reports of whales or other wildlife have been reported on or near our other routes or when whales have been reported on the east side of San Juan Island. We make this choice because on average this route has the highest chance of seeing killer whales and other wildlife even without a positive whale report! On windy days, we use the east side route because it is the most sheltered area for safe kayaking. Even expert kayakers appreciate how relaxing the paddling can be on the east side as it permits them more ease in wildlife watching. The east route is also the only day trip route which paddles to a different island! We typically spend the day on Turn Island which offers enchanting views from all sides as well as a National Wildlife Refuge and a State Park. The east side beach is just a few minutes from Friday Harbor which greatly reduces shuttle time. This route maximizes time on the water and thus your chances of encountering wildlife!
The south side route visits the scenic San Juan Island National Historical Park at the south end of San Juan Island. Killer whale watching for both types is excellent here. Especially on the Salmon Bank that extends from the picturesque Cattle Point Lighthouse. Large concentrations of baitfish and salmon occur here and attract orcas, minke whales, porpoises, seals and sea lions. In present day, suppressed salmon counts have resulted in fewer salmon orca sightings than in the past. We may decide to operate your tour on this route if we feel it gives us the best chance of whale watching success. However, on most days, the east side of San Juan Island has a higher chance of seeing whales and other wildlife. The south side route is very exposed to strong winds on certain days and would be avoided under those conditions even if whales are reported on the south side!
The west side route explores the rugged west side of San Juan Island. Migrating salmon have historically preferred this shore making it historically the best route for finding pods of salmon orca. In present day, suppressed salmon counts have resulted in fewer salmon orca sightings than in the past. The route passes by Lime Kiln Lighthouse and Marine State Park, acknowledged as the former best park in the world for orca whale-watching from land! However, on most days, the east side of San Juan Island has a higher chance of seeing whales and other wildlife. When whales aren’t present we usually see porpoises, seals, marine birds, and several active bald eagle nests. Weather and currents must be cooperative as the west side route is the least protected from inclement weather. If winds there are too strong for safe kayaking, we will use an alternate route even if whales are reported on the west side!
The San Juan Islands can experience extreme winds or currents even in summer. This can occasionally cause us to reduce our intended time within, or avoid entirely, the primary orca watching zone as safety is the top priority. In these situations we always have opportunities to watch for whales from trails or beaches that overlook the the best areas.
National Geographic chooses our San Juan Islands Kayaking tours in “10 Best Trips in the World for 2011.”
Sea Quest Kayak Tours is on ABC News! See us Kayaking with Orca Whales in the San Juan Islands.
San Juan Islands Kayaking Trips in Killer Whale Waters of Washington – a World’s Top 10 Adventure Bargain!
National Geographic chooses our San Juan Islands Kayaking tours in “10 Best Trips in the World for 2011.”